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IDEvaluator

Computes a 'q-value vs. #PSM' plot which is saved as an image to visualize the number identifications for a certain q-value.

An arbitrary number of idXML files resulting from a target+decoy search can be provided as input.

Since the q-value can be computed independently from a scoring scheme, no further preprocessing (like IDPep or FDR) is required, apart from a target-decoy annotation! I.e., apply PeptideIndexer to the immediate output of a search engine (or ConsensusID) and use this as input to this tool.

Note
For mzid in-/out- put, due to legacy reason issues you are temporarily asked to use IDFileConverter as a wrapper. The command line parameters of this tool are:
 INI file documentation of this tool:  

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Jan 20 2016 22:50:36 using doxygen 1.8.9.1