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Here is a list of all class members with links to the classes they belong to:
- a -
AAAfter :
PeptideProteinMatchInformation
AABefore :
PeptideProteinMatchInformation
abs_prec_error :
RNPxlReportRow
accessions :
RNPxlReportRow
addHit() :
FoundProteinFunctor
arch :
OpenMSOSInfo
- c -
charge :
RNPxlReportRow
computeBinnedCoverage() :
OpenSwathWorkflow
computeHyperScore() :
SimpleSearchEngine
copyBatchTransitions_() :
OpenSwathWorkflow
- d -
deisotopeAndSingleChargeMSSpectrum() :
SimpleSearchEngine
doWrite_ :
OpenSwathTSVWriter
- e -
enzyme_ :
FoundProteinFunctor
extra_rt_extract :
OpenSwathWorkflow::ChromExtractParams
extraction_function :
OpenSwathWorkflow::ChromExtractParams
extractMarkerIons() :
MarkerIonExtractor
- f -
filter_passed :
FoundProteinFunctor
filter_rejected :
FoundProteinFunctor
FoundProteinFunctor() :
FoundProteinFunctor
- g -
getArchAsString() :
OpenMSOSInfo
getModifications_() :
SimpleSearchEngine
getOSAsString() :
OpenMSOSInfo
getString() :
RNPxlReportRow
,
RNPxlReportRowHeader
- h -
HasInvalidPeptideLengthPredicate() :
SimpleSearchEngine::HasInvalidPeptideLengthPredicate
- i -
input_filename_ :
OpenSwathTSVWriter
isActive() :
OpenSwathTSVWriter
- l -
logfactorial() :
SimpleSearchEngine
- m -
m_2H :
RNPxlReportRow
m_3H :
RNPxlReportRow
m_4H :
RNPxlReportRow
m_H :
RNPxlReportRow
main_() :
SimpleSearchEngine
,
TOPPRNPxl
MapType :
FoundProteinFunctor
marker_ions :
RNPxlReportRow
min_size_ :
SimpleSearchEngine::HasInvalidPeptideLengthPredicate
min_upper_edge_dist :
OpenSwathWorkflow::ChromExtractParams
ms1_map_ :
OpenSwathWorkflow
mz_extraction_window :
OpenSwathWorkflow::ChromExtractParams
- n -
no_id :
RNPxlReportRow
- o -
ofs :
OpenSwathTSVWriter
OpenMSOSInfo() :
OpenMSOSInfo
OpenSwathTSVWriter() :
OpenSwathTSVWriter
OpenSwathWorkflow() :
OpenSwathWorkflow
operator!=() :
FoundProteinFunctor
operator()() :
FoundProteinFunctor
,
SimpleSearchEngine::HasInvalidPeptideLengthPredicate
operator<() :
PeptideProteinMatchInformation
operator==() :
PeptideProteinMatchInformation
,
FoundProteinFunctor
original_mz :
RNPxlReportRow
os :
OpenMSOSInfo
os_version :
OpenMSOSInfo
- p -
pep_to_prot :
FoundProteinFunctor
peptide :
RNPxlReportRow
peptide_weight :
RNPxlReportRow
performExtraction() :
OpenSwathWorkflow
performRTNormalization() :
OpenSwathWorkflow
position :
PeptideProteinMatchInformation
postProcessHits_() :
SimpleSearchEngine
ppm :
OpenSwathWorkflow::ChromExtractParams
prepare_coordinates() :
OpenSwathWorkflow
prepare_coordinates_wrap() :
OpenSwathWorkflow
prepareLine() :
OpenSwathTSVWriter
preprocessSpectra_() :
SimpleSearchEngine
protein_index :
PeptideProteinMatchInformation
- r -
registerOptionsAndFlags_() :
SimpleSearchEngine
,
TOPPRNPxl
rel_prec_error :
RNPxlReportRow
RNA :
RNPxlReportRow
RNA_weight :
RNPxlReportRow
rt :
RNPxlReportRow
rt_extraction_window :
OpenSwathWorkflow::ChromExtractParams
RTNormalization() :
OpenSwathWorkflow
- s -
score :
RNPxlReportRow
scoreAllChromatograms() :
OpenSwathWorkflow
selectChrom_() :
OpenSwathWorkflow
selectPeptidesForBatch_() :
OpenSwathWorkflow
simpleExtractChromatograms() :
OpenSwathWorkflow
SimpleSearchEngine() :
SimpleSearchEngine
- t -
TOPPRNPxl() :
TOPPRNPxl
Type :
SAValue< Index< StringSet< Peptide >, IndexWotd<> > >
- u -
use_ms1_traces_ :
OpenSwathTSVWriter
,
OpenSwathWorkflow
- v -
VALUE :
EquivalenceClassAA_< T >
- w -
writeHeader() :
OpenSwathTSVWriter
writeLines() :
OpenSwathTSVWriter
- x -
xl_weight :
RNPxlReportRow
OpenMS / TOPP release 2.0.0
Documentation generated on Wed Jan 20 2016 22:50:37 using doxygen 1.8.9.1