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PILISModelCV

Perform a cross validation of the PILIS model parameters

Experimental classes:
This TOPP-tool is not well tested and not all features might be properly implemented and tested!
pot. predecessor tools $ \longrightarrow $ PILISModelCV $ \longrightarrow $ pot. successor tools
MascotAdapter (or other ID engines) PILISIdentification
PILISModelTrainer

A cross validation is performed to find the best parameters. The ini file contains for each parameter that can be optimized a flag, whether it should be used, a min value, a max value and a step size. These parameters are used to perform a grid search on the parameter. The result is a model with best performing parameter set. More on the cross validation can be found at the docu of the PILISCrossValidation class.

Note
Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

INI file documentation of this tool:


OpenMS / TOPP release 2.0.0 Documentation generated on Wed Jan 20 2016 22:50:36 using doxygen 1.8.9.1